Quantitative trait loci (QTLs) for stress resistance (updated Dec 22, 2011)

o Data classification in Tables is not absolutely strict. Check the specific report.

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Select the Stress: (data is sorted by crop within a given stress)

o Specific root and shoot responses under drought (see also 'whole plant' below)

o Osmotic adjustment

o Whole plant and crop drought resistance

o Hormonal responses under drought

o Water-use and photosynthetic activity under drought

o Flooding/waterlogging/submergence tolerance

o Salinity tolerance

o Cold tolerance

o Heat tolerance

o Stay-green (non-senescence)

o Mineral deficiency tolerance

o Mineral toxicity resistance

Specific root and shoot responses under drought (see also 'whole plant' below) Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Rosette growth	Arabidopsis	Ler x An-1	RIL	2	Tisné et al., 2010	10703
Chloroplast function under drought	Barley	Arta’ x Hordeum spontaneum 41-1	RIL	2	Guo et al. 2008	9399
Root size	Barley	Derkado x B83-12/21/5	DHL	Many	Chloupek et al. 2006	8262
Various regulatory candidate genes	Barley	Several		13	Tondelli et al. 2006	8189
Various physiological traits	cotton	G.hirsutum x G.barbadense		33	Saranga et al. 2004	7016
Seedling resistance	Cowpea	T93K503-1 x CB46	RIL	7	Muchero et al. 2010	10252
Root architecture and water acquisition	Lettuce	Salians X UC92G489	F2	13	Johnson et al. 2000	5041
Leaf elongation rate in correspondence with ASI	Maize	Ac7643 and Ac7729/TZSR	RIL	5	Welcker et al., 2007	8701
Leaf elongation under stress in several populations	Maize	Several		19	Welcker et al., 2011	11322
Leaf temperature and seedling DM under drought stress	Maize	Zong3 x 87-1	RIL	9	Liu et al., 2011	10815
Roots traits and yield	Maize	Lo964 x Lo1016	F3	<11	Tuberosa et al. 2002	5902
Roots traits and yield	Maize	Lo964 x Lo1016	NIL	1	Landi et al., 2010	10575
Seedling root traits in PEG solution	Maize	Ac7643 x Ac7729/TZSRW	RIL	13	Ruta et al. 2010	10255
Seedling survival	Maize	BC inbred lines of 11 crosses	BC2F2	7	Hao et al. 2009	10037
Various shoot & root traits	Maize	Tropical population	RIL	30	Messmer et al., 2011	11138
Various plant traits in Mannitol solution and soil in pots	Medicago truncatula	Jemalong A17 x F83005.5	RIL	21	Badri et al., 2011	11209
Photosynthetic pigment oxidation under stress	Pearl millet	PRLT2/89-33 x H77/833-2		Correlation with antioxidants	Kholová et al., 2011	10748
Cellular membrane stability (CMS) under drought	Rice	CT9993 X IR62266	DHL	9	Tripathy et al. 2000	4793
Growth and development under PEG stress in Hydroponics	Rice	Zhenshan 97 x Minghui 63	RIL	14	Cui et al., 2008	9158
Growth and development under PEG stress in Hydroponics	Rice	Akihikari × IRAT109	BIL	1	Kato et al. 2008	9237
Leaf epicuticular wax and other trait responses under drought	Rice	CT9993-5-10-1-M x IR62266-42-6-2	DHL	19	Srinivasan et al., 2008	9593
Leaf water relations and rolling	Rice	Bala x Azucena	RIL	13	Khowaja & Price, 2008	9242
Root growth traits	Rice	Azucena X Bala	RIL	<24	Price et al. 2002	6078
Root length	Rice	Kalinga III x Azucena	NILS	1	Steele et al. 2006	8097
Root depth/length	Rice	IR64 x Kinandang Patong	RIL	1 major	Uga et al., 2011	11056
Root length, number, thickness, penetration index	Rice	IR58821 X IR52561	RIL	28	Ali et al. 2000	4998
Root morphology and root distribution	Rice	IR64 X Azucena	DHL	39	Yadav et al. 1997	3482
Root morphology, root cell length	Rice	Azucena X Bala	F2	24	Price and Tomos 1997	3558
Root thickness, root penetration index	Rice	CT9993 X IR62266	DHL	5	Zhang et al. 2001	5456
Root thickness, root penetration index	Rice	IR64 X Azucena	DHL	12	Zheng et al. 2000	5629
Root traits	Rice	CT9993 X IR62266	DHL*	8	Kamoshita et al. 2002	5780
Root traits	Rice	IR1552 x Azucena	RIL		Zheng et al. 2003	6890
Seedling drought resistance	Rice	Indica var x Azucena	RIL	7	Zheng et al., 2008	9583
shoot biomass, deep root morphology, root thickness	Rice	IR58821/IR52561	RIL	< 12	Kamoshita et al. 2002	5998
Tiller and root number, thickness, dry weight	Rice	CO39 X Moroberekan	RIL	18	Champoux et al. 1995	3070
Tiller and root number, penetration ability	Rice	CO39 X Moroberekan	RIL	39	Ray et al. 1996	5623
Tiller, total and penetrated root number, ratio	Rice	Azucena X Bala	RIL	18	Price et al. 2000	4599
Various morpho-physiological traits and yield under drought	Rice	(Teking background)	Introgression lines	40	Zhao et al. 2008	9372
Yield and root traits under limited water	Rice	IR64/Azucena	DHL		Venuprasad et al. 2002	6264
Leaf pubescence and water status	Soybean	'kefeng1' x 'nannong1138-2'	RIL	20	Du et al., 2009	9895
Photosystem activity (chlorophyll fluorescence parameters)	Sunflower	PAC2 x RHA266	RIL	5+	Kiani et al., 2008	9524
Water soluble carbohydrates (stem reserve storage)	Wheat	3 populations		7-16	Rebetzke et al., 2008	9438

Osmotic adjustment Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Osmotic adjustment under drought	Barley	Tadmor X Er/Amp	RIL	12	Teulat et al. 1998	3729
Osmotic adjustment and dehydration tolerance	Rice	CO39 X Moroberekan	RIL	1	Lilly et al. 1996	3346
Osmotic adjustment under drought	Rice	CT9993 X IR62266	DHL	5	Zhang et al. 2001	5456
Osmoregulation under drought	Sunflower	‘PAC2’ X ‘RHA266’	RIL	1 major + 4	Kiani et al., 2007	8737
Osmoregulation under drought	Wheat	Songlen X Cobdor*4/3Ag14	RIL	1	Morgan and Tan 1996	3395

Whole plant and crop drought resistance Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Rainfed field performance in several locations	Barley	Barke x HOR11508 (H.Spontaneum)	DHL	80	Talamè et al., 2004	7208
Relative water content	Barley		RIL	9	Teulat et al., 2003	6891
Seedling desiccation tolerance	Barley	Mona x H. spontaneum	F4	7	Zhang et al. 2005	7594
Yield and components under terminal stress	Chickpeas	ILC 588 x ILC 3279	RIL	15 genomic regions	Rehman et al., 2011	10872
Seedling drought induced senescence	Cowpea	IT93K503-1 x CB46	RIL	10	Muchero et al., 2009	9824
Various productivity & physiological traits	Groundnut	TAG 24 × ICGV 86031	RIL	105	Ravi et al., 2011	10925
Adaptive and constitutive traits	Maize	12 populatios x 22 locations		Many	Hao et al., 2010	10430
Flowering parameters under drought, ASI	Maize	Ac7643S5 X Ac7729/TZSRWS5	F2	7	Ribaut et al. 1996	3306
Plant height, ear number, days to silking, yield	Maize	SD34 X SD35	F3	5	Agrama and Moussa 1996	3344
QTL × environment interaction	Maize		F2-F3-		Vargas et al. 2006	8265
Yield and ASI under field drought	Maize	X178 × B73	F2-F3-	2 clusters (45 & 60 QTLS)	Hao et al. 2008	9389
Yield and components under stress	Pearl millet	H77 x PRLT 2/89-33s		various	Yadav et al. 2002	5820
Yield and components under stress	Pearl millet	(ICMB 841) x (863B)	F3 test cross		Yadav et al. 2004	7217
Yield under terminal stress	Pearl millet	(ICMB 841) x (863B)	F2:F4	3	Bidinger et al., 2007	8894
Response to and recovery from PEG applied stress	Potato	C × E diploid potato mapping population		23	Anithakumari et al., 2011	11205
Dehydration avoidance	Rice	Bala x Azucena	RIL	17	Price et al. 2002	5901
Dehydration avoidance and dehydration tolerance traits	Rice	Indica x Japonica	RIL	27, 36 & 38	Yue et al. 2006	8371
Dehydration avoidance and dehydration tolerance traits	Rice	Introgression lines from O. rufipogon	lines	12	Zhang et al.,2006	8467
Dehydration avoidance and dehydration tolerance traits	Rice	IR 58821 x IR 52561	RIL	18 to 38	Manickavelu et al., 2006	8573
Leaf rolling, leaf drying, RWC, growth	Rice	IR64 X Azucena	DHL	42	Courtois et al. 2000	4722
Morphological and physiological traits	Rice	IR64 X Azucena	DHL	15	Hemamalini et al. 2000	4669
Morphological and physiological traits	Rice	Bala x Azucena	RIL	24	Gomez et al., 2007	8550
Physio-morphological traits	Rice	CT9993 x IR62266	RIL	many	Subashri et al., 2009	9735
Productivity, water status, roots	Rice	Indica x Upland	RIL	39	Bing Yue et al., 2005	8036
Yield and its components under drought	Rice	Bala x Azucena	RIL	31	Lafitte et al., 2004	7369
Yield and its components under drought	Rice	Upland cv x Lowland cv	RIL	Several main effects	Zou et al. 2006	8096
Yield and its components under drought	Rice	Introgression Indica lines		36	Xu et al., 2005	8037
Yield under drought at reproductive stage over 2 years	Rice	Vandana X Way Rarem	RIL	1	Bernier et al., 2007	8772
Yield under stress	Rice	CT9993 x IR62266	DHL	1	Kumar et al. 2007	8947
Yield under stress over years and environments	Rice	Apo/2 x Swarna	RIL	1	Venuprasad et al. 2009	10199
Yield, biomass, Osmotic adjustment, roots	Rice	CT9993 x IR62266	DHL	47	Chandra Babu et al. 2003	6612
Yield, yield components, panicle sterility etc’	Rice	CT9993 x IR62266	RIL	77	Jonaliza et al. 2004	7176
Delta (transpiration efficiency) in relations to yield	Wheat	3 populations	DHL	9 - 13	Rebetzke et al., 2008	9603
Multi QTL model and GxE interactions	Wheat		RIL	Multi QTL model	Matthews et al., 2008	9601
Various morpho-physiological traits	Wheat	Durum x Wild emmer	RIL	many	Peleg et al., 2009	9896
Various productivity & physiological traits	Wheat	Seri M82 x Babax	RIL	Many	McIntyre et al. 2010	10253
Various productivity & physiological traits	Wheat	Seri M82 x Babax	RIL	14, 16, 10	Suzuky Pinto et al., 2010	10658
Yield and its components under drought	Wheat	Oste-Gata x Massara-1	F3-F4	20	Golabadi et al., 2011	10751
Yield interaction with water supply and hot conditions	Wheat	Trident’ x ‘Molineux	DHL	1	Kuchel et al., 2007	9103
Yield over 15 diverse environments	wheat	Low association with yield under stress			Maccaferri et al., 2011	10756
Yield over 16 diverse environments	Wheat (durum)	Kofa x Svevo.	RIL		Maccaferri et al., 2011	11214

Hormonal responses under drought Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Leaf ABA concentration	Maize	Os420 X IABO78	F3	16	Tuberosa et al. 1998	5625
Leaf ABA concentration, yield	Maize	Os420 X IABO78	F4	17	Sanguineti et al. 1999	4073
Leaf size and ABA accumulation	Rice	IR20 X 63-83	F2	17	Quarrie et al. 1997	3586
ABA concentration	Wheat	Chinese Spring X Ciano 67	DHL F2	1	Quarrie et al. 1994	2942

Water-use and photosynthetic activity under drought Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Carbon isotope discrimination (WUE)	Arabidopsis			5	Juenger et al. 2005	7767
Adventitious root formation under waterlogging	Maize	CV B64 x teosinte	F2	2	Mano et al., 2005	7697
Vacuolar invertase activity	Maize	F2 X I0	RIL	18	Pelleschi et al. 1999	5626
Leaf rolling and stomatal conductance	Rice	Azucena X Bala	F2	8	Price et al. 1997	3671
Carbon isotope discrimination and photosynthesis	Rice	Two populations		several	Takai et al., 2009	9825
WUE, RWC, Dry, carbon isotope discrimination	S. scabra	CPI93116 X Fitzroy	F2	36	Thumma et al. 2001	5281
Yield, maturity, water use efficiency	Soybean	Minsoy X Noir 1	RIL	3	Specht et al. 2001	5397
Photosynthesis and water status traits	Sunflower	PAC2 x RHA266	RIL	19	Herve D. et al. 2001	5537

Flooding/waterlogging/submergence tolerance Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Flooding tolerance	Echinocloa	E. crus-galli var. praticola × E. crus-galli var. formosensis	F2	2	Fukao et al. 2004	7121
Waterlogging tolerance	Lolium perenne	NA x × AU6	RIL	37	Pearson et al., 2011	10862
Root aerenchyma formation	Maize	B64 × teosinte	F2	4	Mano et al. 2077	8924
Waterlogging tolerance, root & shoot traits	Maize	HZ32’ x ‘K12’	F2:F3	Up to 34	Qiu et al., 2007	8881
Development of hypertrophied lenticels and leaf epinasty	Quercus robur	F1	F1	5	Parelle et al., 2007	8720
Flooding tolerance - seedlings	Rice	Khao Hlan x IR64	BC2F2	5	Angaji et al. 2010	10267
Germination under low temperature and anoxia	Rice	USSR5 (japonica) x N22 (indica)	F2	11 & 2	Jiang et al. 2006	8288
Leaf and internode elongation under submergence	Rice	IR74 X Jalamagna	RIL	25	Sripongpangkul et al. 2000	5042
Submergence tolerance	Rice	IR74 X FR13A	RIL	4	Nandi et al. 1997	5624
Submergence tolerance	Rice	DX18-121 X M-202	F2	1	Xu et al. 2000a	5628
Submergence tolerance	Rice	IR49830 x CR6241; FR13A x CT6241; Jao-Hom-Nin x KDML105	DHL;RIL;F2		Toojinda et al. 2003	6311
Submergence tolerance	Rice (Jasmine)	KDML105 x FR13A;IR67819-;IR49830	BC	1	Siangliw et al., 2003	6312
Sat_064 marker – no effect	Soybean	A5403 x Archer; 9641 x Archer	RIL; NIL	-	Reyna et al. 2003	6784
Flooding survival	Wheat	Forno x Oberkulmer	RIL	5	St. Burgos et al. 2001	5668

Salinity tolerance Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Growth and germination	Arabidopsis	Columbia-4 x Landsberg erecta	RIL	Up to 11	Quesada et al. 2002	6233
Ten different traits	Barley	CM72 x Gairdner	DHL	30	Xue et al. 2009	10009
Growth under stress	Clover	Haifa2 x LCL2	F1 derived	many	Wang et al. 2010	10254
Sodium exclusion	Durum wheat	low Na+ /Tamaroi		1	Lindsay et al. 2004	7438
Chlorate resistance	Rice	Japonica x indica	DHL	3	Teng et al., 2006	8551
Dry mass, Na^+, K^+uptake, concentration and ratio	Rice	IR4630 X IR15324	RIL	25	Koyama et al. 2001	5631
Germination under salinity stress	Rice	Japonica x indica	RIL	16	Wang et al., 2011	10878
Growth in saline water	Rice	Nipponbare x Kasalath	BIL	27	Takehisa et al., 2004	7220
Na+ K+ absorption	Rice		RIL	2	Bonilla et al. 2002	5918
Na^+, K^+uptake and concentration	Rice	Nona Bokra X Pokkali //IR4630 X IR10167	RIL	16	Flowers et al. 2000	4638
Na^+, K^+uptake and concentration	Rice	Nona Bokra x Koshihikari,	F2-F3	2 major + minors	Lin et al. 2004	6981
Salinity tolerance	Rice	Co39 x Moroberekan	RIL	1 major +	Ul Haq et al., 2010	10529
Salinity tolerance	Soybean	FT-Abyara × C01 and Jin dou No. 6 × 0197	RIL	1 major	Hamwieh et al., 2011	10944
Salinity tolerance from wild resource	Soybean	Jackson x JWS156-1	RIL & F2	1	Tuyen et al., 2010	10521
Seedling tolerance in greenhouse and field	Soybean	Kefeng No. 1 x Nannong1138-2	RIL	3+6+1	Chen et al., 2008	9544
Survival rating in field and greenhouse	Soybean	S-100 (salt tolerant)/Tokyo	F2:5	1	Lee et al. 2004	7429
Fruit yield	Tomato	2 Solanum populations	RIL	8	Villalta et al., 2007	8817
Salinity tolerance associated with fruit yield	Tomato	2 Solanum populations	RIL	2	Villalta et al. 2008	9322
Various plant traits under salinity	Tomato	L. pennellii introgression lines		311	Frary et al., 2011	11194
Salinity tolerance	Wheat	Opata85 x W7984	RIL	47	Ma et al., 2007	8552
Yield and its components in the field	Wheat	Opata85 x W7984	RIL	36	Díaz De León et al., 2011	11206
Sodium exclusion	Wheat	Berkut x Krichauff	DHL	5	Genc et al., 2010	10612

Cold tolerance Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Winter hardiness, fall growth, freezing injury	Alfalfa	Blazer XL 17 X Peruvian 13	BC	14	Brouwer et al. 2000	4968
Freezing tolerance	Arabidopsis	A.Thaliana x Landsberg erecta		7	Alonso-Blanco et al., 2005	8027
Cold tolerance; Vrn-1/Fr1	barley	Nure × Tremois	DHL	1	Francia et al. 2004	7046
Freezing tolerance (CBF gene family)	Barley	Dicktoo × Morex	RIL		Skinner et al. 2006	8264
Frost tolerance with and without hardening	Bean (faba)	Cross between 2 frost resistant lines	RIL	5	Arbaoui et al., 2008	9461
Freezing tolerance	Citrus	C.grandis x P.trifoliata	F1	1+	Weber et al. 2003	6573
Spring and fall cold-hardiness	Douglas-fir		F2	26	Jermstad et al. 2001	5386
Winter survival (field)	Lentil	WA8649090/Precoz	RIL	1-3	Kahramana et al. 2004	6893
Chilling stress and photosynthesis	Maize	Ac7643 x Ac7729/TZSRW	RIL	8	Fracheboud et al. 2002	6136
Chilling tolerance growth and development	Maize	Lo964 x Lo1016	F2-F4	20	Hund et al., 2004	7292
Early vigor, leaf chlorosis, leaf purpling, frost damage	Maize	SL x TH	DHL	Up to 28	Presterl et al., 2007	8818
Photosynthesis/Chlorophyll fluorescence	Maize		F2:3	2	Fracheboud et al. 2004	7464
Physiological traits and growth under chilling stress	Maize	ETH-DH7 x ETH-DL3	F2:3	many	Jompuk et al., 2005	7600
Tolerance to chilling-dependant photoinhibition	Maize		F2:3	3	Pimenterl et al., 2005	7909
Cold tolerance in germination & seedling traits	Medicago truncatula	Population LR5		Several	Menna Barreto Dias., 2011	10861
Crown freezing tolerance	Oats	Kanota x Ogle	RIL	7 + epistatic	Wooten et al., 2008	9174
Frost tolerance (and photoperiodic response)	Pea	Champagne x Terese	RIL	3	Lejeune-Hénaut et al. 2008	9380
Frost tolerance and physiological traits	Pea	Champagne x Terese	RIL	several	Dumont et al., 2009	9917
Chilling tolerance - seedlings	Rice	AAV002863 x Zhenshan97B	DHL	1+5	Qiaojun Lou et al., 2007	9058
Chilling tolerance in seedlings	Rice	M-202 x IR50	RIL and F5-F10	1	Andaya and Tai, 2006	8412
Cold Tolerance	Rice	Norin-PL8 x Silewah	NIL	2	Saito et al. 2001	5689
Cold tolerance	Rice	ZL1929-4 x Towada	F2, F3	1	Zhou et al., 2010	10613
Cold tolerance – seedling assay	Rice	Tolerant japonica/Sensitive indica	RIL	3 + minors	Zhang et al. 2005	7522
Cold tolerance in germination & seedling stages	Rice	Daguandao x IR28	RIL	7	Wang et al., 2011	11208
Cold tolerance at booting growth stage	Rice	Hokkai-PL9 x Hokkai287,	F2	1	Makoto Kuroki et al., 2007	9039
Cold tolerance at the booting stage	Rice	Akihikari X Koshihikari	DHL	3	Takeuchi et al. 2001	5594
Cold tolerance for spikelet sterility	Rice	M-202 x IR50	RIL	2+	Andaya & Mackill 2003	6550
Cold tolerance for spikelet sterility	Rice	nmingxiaobaigu x Towada	NIL	8	Xu et al. 2006	9308
Cold tolerance for spikelet sterility	Rice	Reiziq × Lijiangheigu	F2-BCF1	1	Ye et al., 2010	10676
Cold tolerance in germination	Rice	Asominori' x 'IR24	RIL	Several small effect	Li et al. 2009	10041
Tolerance to cold induced necrosis and wilting	Rice	M-202 x IR50	RIL	1	Andaya & Mackill 2003	6801
Freezing tolerance acclimated plants	Salix	Salix viminalis x SW901290	F2	19	Tsarouhas et al., 2004	7195
Chilling tolerance at germination and seedling stage	Sorghum	Shan Qui Red x SRN39	RIL	4	Knoll et al. 2008	9320
Canopy wilting	Soybean	KS4895 x Jackson	RIL	4	Charlson et al. 2009	10049
Chilling tolerance in seed development	Soybean	Hayahikari x Toyomusume	RIL	1	Ikeda et al., 2009	9916
Chilling tolerance in seed yield	Soybean	Hayahikari x Toyomusume	RIL	3	Funatsuki et al., 2005	8034
Chilling tolerance	Tomato	L.esculentum x L.hirsutum	NIL	1	Goodstal et al., 2005	8035
Shoot wilting and ammonium uptake	Tomato	TS5 X LA1778	BC	15	Truco et al. 2000	5043

Heat tolerance Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Heat tolerance in germination & seedling traits	Medicago truncatula	Population LR4		Several	Menna Barreto Dias., 2011	10861
Heat tolerance in spikelet fertility	Rice	Bala × Azucena	RIL	1+2+8	Jagadish et al., 2010	10536
Heat tolerance in spikelet fertility	Rice	996 x 4628	RIL	2	Xiao et al., 2011	10877
Heat tolerance in grain filling	wheat	Ventor/Karl92	F1-F2-F3	2	Yang et al. 2002	6073
Heat tolerance in terms of spike productivity	Wheat		RIL	14	Mason et al., 2011	11084
Heat tolerance in yield components over years	Wheat	Halberd x Cutter	RIL	5	Mason et al., 2010	10496

Stay-green (non-senescence) Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Stay green traits	Maize	Q319 x Mo17	F2	10	Zheng et al. 2009	9688
Stay green; chlorophyll content	Rice	Mutagenesis of Hwacheong-wr	Mutant	1	Cha et al. 2002	5921
Stay green	Sorghum	B35 x Tx7000	RIL	4	Sanchez et al. 2002	5903
Stay green	Sorghum	IS9830 E36-1 X N13 E36-1.	RIL	5-8	Haussmann et al. 2003	6348
Stay green	Sorghum	RTx7000 lines +BTx642 DNA	NIL	4	Harris et al., 2007	8700
Stay green under drought	Sorghum	QL39 X QL41	RIL	5	Tao et al. 2000	4788
Stay green, chlorophyll content	Sorghum	B35 X TX7000	RIL	13	Xu et al. 2000	4748
Stay green, chlorophyll content	Sorghum	B35 X TX430	RIL	7	Crasta et al. 1999	4910
Stay green, pre-flowering drought stress	Sorghum	SC56 X TX7000	RIL	9	Kebede et al. 2001	5511
Senescence under drought and optimal conditions	Wheat	Beaver x Soisson	DHL		Verma et al. 2004	6931
Stay green	Wheat	Chirya 3 × Sonalika	RIL	3	Kumar et al., 2010	10497

Mineral Deficiency tolerance Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Boron efficiency	Arabidopsis	Ler × Col	RIL	4	Zeng et al., 2007	8989
Boron efficiency & tolerance in yield	Arabidopsis		RIL	5+3	Zeng et al., 2008	9131
Phosphorus deficiency & root elongation	Arabidopsis	Bay-0 × Shahdara	RIL	1	Raymond et al. 2006	8077
Manganese deficiency	Barley	Aagi Nijo X WI2585	F2	1	Pallotta et al. 2000	5044
Phosphorus Uptake efficiency	Bean	DOR364/G19833	RIL	6	Liao et al. 2004	7392
Phosphorus Uptake efficiency related root traits	Bean	DOR364/G19833	RIL	26	Beebe et al. 2006	8113
Phosphorus Uptake, root hair and acid exudation	Bean	DOR364/G19833	RIL	19	Yan et al. 2005	7586
Nitrogen deficiency & production and quality	Belgian Endive	NS1 x NR2	RIL	many	Cassan et al., 2010	10563
Boron deficiency	Brassica napus	Qingyou10 X 'Bakow'	F2	4	Xu et al. 2001	5565
Phosphorus deficiency & root morphology	Brassica napus		RIL	62	Yang et al., 2010	10477
Various minerals content	Brassica rapa		DHL	10+	Wu et al., 2009	9501
Phosphorus deficiency & yield	Maize	5003(107) x 178	F2:3	many	Li et al. 2010	10417
Phosphorus deficiency & root hairs	Maize	B73 x Mo17	RIL	5	Zhu et al. 2005	7761
Phosphorus utilization efficiency parameters	Maize	082 x Ye107	F2:3	5-8	Chen et al., 2009	9738
Iron deficiency chlorosis	Mungbean	KPS1 x NM10-12	F2	1 gene	Srinives et al., 2010	10648
Acid phosphatase activity	Rice	IR20 X IR55178-3B-9-3	RIL	6	Hu et al. 2001	5630
Nitrogen deficiency	Rice	Zhenshan 97 x Minghui 63	RIL	4-8	Lian et al. 2006	8095
Nitrogen deficiency	Rice	R9308 x Xieqingzao B	RIL	7	Feng et al., 2010	10698
Phosphorus deficiency & root elongation	Rice	Gimbozu/Kasalath	F3 & F8	1	Shimizu et al. 2004	7476
Phosphorus uptake	Rice	Nipponbare/Kasalath	NIL	4	Wissua and Ae 2001	5730
Phosphorus uptake (PUP1)	Rice	Nipponbare/Kasalath	F2/F3 NIL	1	Wissua et al. 2002	6286
Zinc Deficiency tolerance	Rice	IR74 x Jalmagna	RIL	2-4	Wissuwa et a., 2006	8505
Iron deficiency chlorosis	Soybean	2 populations	“Breeding lines”	3	Wang et al. 2008	9321
Iron deficiency chlorosis (in nutrient solution)	Soybean	Pride B216 X A15, Anoka X A7	F2	10,19	Lin et al. 2000	5155
Iron deficiency chlorosis (in the field)	Soybean	Pride B216 X A15, Anoka X A7	F2	7, 4	Lin et al. 2000a	5154
Phosphorus deficiency resistance	Soybean	Kefeng x Nanong 1138-2 were	RIL	7	Li et al. 2005	7700
Phosphorus deficiency resistance & flower abscision	Soybean	'Bogao' x 'Nannong 94-156	RIL	1	Zhang et al., 2010	10463
Phosphorus deficiency resistance (seedlings)	Soybean	Nannong94-156 x Bogao	RIL	34	Zhang et al., 2009	9865
Phosphorus deficiency & root morphology	Soybean	BD2 x BX10	RIL	3 clusters of QTLs	Liang et al., 2010	10488
Manganese deficiency	Wheat	Stojocri 2 x Hazar	F2	1	Khabaz-Saberi, et al. 2002	6115
Nitrogen supply responses & yield	Wheat		RIL	13	Laperche et al. 2008	9282
Phosphorus deficiency resistance	Wheat	Lovrin 10 x Chinese Spring	DHL	many	Su et al. 2006	8312
Phosphorus uptake & use efficiency	Wheat	Hanxuan 10 x Lumai 14	DHL	7+6	Su et al., 2009	9812

Mineral toxicity resistance Back to Top

Trait	Species	Population	Type *	QTL#	Reference	I.D. **
Aluminum tolerance	Alfalfa	M. sativa subsp. coerulea	F2	2	Sledge et al. 2002	6062
Aluminum tolerance	Alfalfa	PI 440501-2 X PI 464724-25	BC1F1	3	Narasimhamoorthy et al. 2007	8745
Aluminum tolerance	Arabidopsis	Lansberg erecta x Columbia	RIL	2	Kobayashi and Koyama 2002	6329
Aluminum tolerance	Arabidopsis	Lansberg erecta x Columbia	RIL	2	Hoekenga et al. 2003	6599
Aluminum tolerance	Arabidopsis	Columbia x Kashmir	RIL	1	Ikka et al., 2008	9523
Cadmium tolerance	Arabidopsis	Lansberg erecta x Columbia	RIL	3	Tazib et al. 2009	9963
Selenium tolerance	Arabidopsis	Landsberg erecta x Columbia	RIL	3	Zhang et al. 2006	8234
Selenium tolerance	Arabidopsis	Landsberg erecta, Columbia and Wassilewskija crosses	F1 F2	4	Zhang et al. 2006	8465
Aluminum tolerance	Barley	Dayton X Harlan Hybrid	F2	1	Tang et al. 2000	4927
Aluminum tolerance	Barley	Yambla x WB229	F2	1	Raman et al. 2002	6147
Boron tolerance	Barley	Sahara3771 X Clipper	DHL	3	Hassan et al. 2010	10242
Boron tolerance (uptake, root length, shoot dry weight)	Barley	Sahara3771 X Clipper	DHL	4	Jefferies et al. 1999	5364
Aluminum tolerance	Maize	Cat-100-6 X S1587-17	F2	2	Sibov et al. 2000	5627
Aluminum tolerance	Maize	L53 (susceptible) x L1327 (resistant)	F3/F4	5	Ninamango-Cárdenas et al.2003	6444
Aluminum tolerance	Oat (diploid)	+Comparative mapping		4	Wight et al. 2006	8098
Aluminum tolerance	Rice	Azucena X IR1552	RIL	8	Wu et al. 2000	4789
Aluminum tolerance	Rice	Chiembau X Omon 269-65	F3	20	Nguyen et al. 2001	5367
Aluminum tolerance	Rice	Koshihikari and Kasalath	RIL	3	Ma et al. 2002	6199
Aluminum tolerance	Rice	Asominori x IR24	RIL	3	Xue et al., 2006	8586
Aluminum tolerance (relative root length)	Rice	IR64 X Oryza rufipogon	RIL	5	Nguyen et al. 2003	6434
Boron tolerance	Rice	Nekken-1 x IR36	RIL	1	Ochiai et al. 2008	9382
Cadmium tolerance coefficient	Rice	japonica JX17 x indica ZYQ8	DHL	6	Zue et al. 2009	9653
Chromium tolerance	Rice	117 & 101 x ZYQ8	DH	3	Qiu et al., 2010	10431
Iron Toxicity tolerance	Rice	Nipponbare x Kasalath	BC lines	4	Wan et al 2003	6568
Iron Toxicity tolerance traits	Rice	Azucena x IR64	RIL	24	Dufey et al., 2009	9736
Manganese tolerance	Rice	Azucena x IR1552	RIL	8	Wang et al. 2002	5905
Zinc tolerance	Rice	Asominori x IR24	RIL	3	Dong et al. 2006	8051
Aluminum tolerance	Rye	M39A-1-6 x M77A-1	RIL	3	Miftahudin et al. 2002	5922
Aluminum tolerance	Soybean	Young X PI416937	F4	11	Bianchi-Hall et al. 2000	4921
Aluminum tolerance	Soybean	Essex x Forrest	RIL	11	Sharma et al., 2011	10863
Manganese tolerance (root necrosis)	Soybean	Essex' x `Forrest	RIL	1	Kassam et al., 2004	7193
Aluminum tolerance	Wheat	Bh1146 X Anahuac	RIL	1	Riede et al. 1996	4123
Aluminum tolerance	Wheat	Atlas 66 x Century	RIL	1	Ma et al. 2006	8094
Aluminum tolerance	Wheat	Annong 8455 × Chinese Spring-Sumai 3 7A substitution line	RIL	3	Ma et al. 2006	8400
Aluminum tolerance	Wheat	Landrace FSW x ND35	RIL	3	Cai et al. 2008	9381
Aluminum tolerance	Wheat	Chinese Spring introg. lines		1+1	Navakode et al., 2009	9734
Copper tolerance	Wheat	W7984 X Opata 85	RIL	1	Bálint et al. 2007	8765

(*) DHL= doubled haploid; RIL= Recombinant inbred lines; BC=Backcross; BIL=Backcross recombinant inbred lines; NIL= Near-isogenic lines

(**) For abstract/paper click on I.D. (I.D. number is also the listing in our 'Reference Database)

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